Category: Section 1: Nature and Variety of Living Organisms

Bile: A* Grade 9 Understanding for IGCSE Biology 2.30 2.31

The liver is the largest internal organ and plays over 500 different roles in the body.   Many functions are to do with the processing of various chemicals such as carbohydrates, amino acids and lipids.  The liver also removes alcohol and other drugs from the bloodstream:  this is why alcoholics often suffer from liver disease.

But one function of the liver that you need to understand in detail concerns its role in the digestive system.  The liver cells produce a green liquid called bile which is stored in a sac underneath the liver called the gall bladder.  Bile can pass from the gall bladder down the bile duct and as shown in the diagram below, it then mixes with the contents of the duodenum (small intestine) soon after the acidic chyme leaves the stomach.

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What is in bile?

Bile contains a mixture of chemicals.  It has an alkaline substance (hydrogencarbonate ions) which helps to neutralise the chyme as it leaves the stomach.  Remember the pH of the stomach contents is around pH1-2 and in the duodenum, there is a pH of around pH7.5.  The difference in pH is due to the alkali present in bile and pancreatic juice.  Bile also contains excretory molecules called bile pigments.  These are waste molecules from the liver that have been made from the breakdown of haemoglobin.  And finally there are the bile salts.  These play an important role in the digestion of lipids in the duodenum.

How do bile salts improve digestion of lipids in the duodenum?

The duodenum is where many digestive reactions happen in the body.  This is because the pancreatic juice contains many enzymes, all of which catalyse a specific digestive reaction.  One such enzyme is lipase and this enzyme catalyses the following reaction:

lipids + water ——> glycerol and fatty acids

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Fatty acids and glycerol are small enough molecules to be absorbed into the villi in the ileum.  They pass into the lacteal in the centre of each villus to be carried around the body in the lymphatic system.

But the problem is that in the duodenum, the lipid molecules will exist as large droplets.  Large droplets of fat/oil will have a reduced surface area for lipase to bind to and so the rate of digestion of the lipid would be slow.  But bile salts interact with the lipid droplet causing a few large droplets to be broken down into dozens of tiny droplets.  This is called emulsification and while it does not chemically alter the lipid, it does make it easier for lipase to break it down.  Lipase and bile salts together break down lipids much faster than lipase alone.slide_32

Final key point:  there are no digestive enzymes in bile.  But in spite of this, bile plays a crucial role in the digestion of lipid droplets in the duodenum.

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Characteristics of Life: Grade 9 Understanding for IGCSE Biology 1.1

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The iGCSE specification says that all living organisms share the following basic characteristics and then lists 8 bullet points.  This seems unnecessarily unhelpful because every student in the whole word learns MRS GREN for the 7 characteristics of life…

Make sure you understand the exact meaning of each of the following terms:

  • Movement
  • Respiration
  • Sensitivity
  • Growth
  • Reproduction
  • Excretion
  • Nutrition

Not all organisms Move from place to place of course and lots of things move that are not alive.  So that doesn’t make me think that this is a good way to start the whole study of Biology.  It is true that all living things, without exception, Respire.  “Respiration is a series of chemical reactions that happens inside cells in which food molecules are oxidised to release energy for the cell” – good definition that….   Sensitivity means the ability to detect and respond to changes in the environment.  Mammals do this through their nervous and hormonal systems, plants through plant growth substances such as auxin.  Growth either involves a cell getting larger or in multicellular organisms, the two processes of cell division and cell specialisation.  All living things have the potential to Reproduce, to create new individuals of their species.  Excretion is the removal of waste molecules (e.g. carbon dioxide, urea) that have been made inside cells.  Nutrition means either obtaining food molecules by eating another organism or if you are a plant, and I guess none of you are,  by making your own food molecules through photosynthesis.

The people who wrote the specification have added “they control their internal conditions” to the list.  This is actually a better characteristic of life than many above as it is a universal feature of all life.  The term for this process is Homeostasis – the ability to regulate and control the internal environment.

It is a shame that two of the best ways to decide whether something is alive have been left off the list.  All living things on earth are made of cells.  Some organisms are unicellular (Paramecium for example) but many are made of many cells.  And all living organisms have the molecule DNA as their genetic material.  If you get a question on this in the exam, it’s probably better to talk about the 8 characteristics of life the examiner likes… That’s exams for you!

Viruses: Grade 9 Understanding for IGCSE Biology 1.4

Viruses appear in your syllabus in a section entitled “Variety of Living Organisms”.  This is rather unfortunate because of course viruses are not classified as living organisms at all.  The reason they are not alive is simple:  they are not made of cells and they are incapable of carrying out any metabolic reactions.  Viruses are much smaller than any cell, even very small prokaryotic cells such as bacteria.

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In the diagram above you can see in the top right of the picture part of a red blood cell.  Red blood cells are one of the smaller cells in the human body.  The bacterial cell at the bottom of the diagram E.coli is much smaller, and all the blue viruses are much much smaller still.  [The units of length on this diagram are nanometers (nm) – a nanometer is 10-9 m]

All viruses are parasitic as they have to infect a living cell in order to reproduce.

What are viruses made of?

Well remember viruses are not made of cells.  The individual virus particles are called virions and are simply made up of a protein coat (called a capsid) that encloses some genetic material.  The genetic material in a virion can either be DNA or a similar molecule called RNA.

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Viruses can infect all different kinds of living organisms.  The virus on the left in the diagram above is called a bacteriophage and it infects bacterial cells.  You can see the protein coat is arranged into a head, tail and fibres and the genetic material in a bacteriophage is DNA.  The virus on the right is the Influenza virus that infects mammals and birds, causing the disease influenza or “flu”.  Influenza virus is an RNA virus.

Many human diseases are caused by viral pathogens.  Influenza is one (see above) and the other one mentioned in the syllabus is HIV – a virus that causes the diseases AIDS.  HIV is also an RNA virus.  [HIV stands for Human Immunodeficiency Virus and the disease AIDS is acquired immunodeficiency syndrome.]

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Some viruses infect and cause disease in plants.  Tobacco Mosaic Virus infects tobacco plants causing yellow leaves as chloroplasts are not formed correctly in the leaves.

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This is a diagram of a Tobacco Mosaic Virus

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So to summarise:

  • Viruses are not made of cells but are made of tiny particles called virions
  • Viruses are not alive
  • Virus can cause disease in a whole variety of different organisms – animals, plants, bacteria etc.

Five Kingdom classification – Grade 9 Understanding for IGCSE Biology 1.2 1.3

The specification has a section called “Variety of Living Organisms”.  In this section, candidates are asked to learn about the features of the Five Kingdoms of living things and certain examples are mentioned.  This model of grouping organisms states that all living things can be allocated to one of these five groups:

  • Bacteria (Monera)
  • Animals
  • Plants
  • Fungi
  • Protoctists (Protista)

It is disappointing that Viruses are added as a sixth group in this section of the syllabus.  Viruses are not classified as a Kingdom of living things as they are not made of cells and have no metabolism.

Bacteria

Bacteria are small, single celled organisms that are made of a fundamentally different kind of cell to all the other Kingdoms.  Bacterial cells are described as being prokaryotic:  they are smaller than other cells, have no nucleus and no membrane-bound organelles (such as mitochondria or chloroplasts).  Bacteria cells have a cell wall containing a cell membrane but their cell wall does not contain any cellulose.  Instead the bacterial cell wall is made mostly of a molecule called proteoglycan a molecule is only found in bacterial cells.

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Bacteria cells contain DNA (all living things use this molecule as their genetic material) but the key idea is that bacterial DNA is not contained inside a nucleus.  Bacterial DNA is in the form of a single circular ring that just floats around in the cytoplasm of the cell.  This circular ring of DNA is sometimes called the bacterial chromosome (but I dislike this term as the DNA molecule in bacteria is not wrapped around a scaffold of protein as in eukaryote cells). Some bacteria contain small additional rings of DNA that are called plasmids.   These plasmids can be transferred from one bacterial cell to another, and can also be used as a vector in genetic engineering.

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Examples of bacteria mentioned in the specification are Lactobacillus bulgaris a rod–shaped bacterium used in the production of yoghurt and Pneumococcus, a spherical bacterium that is the pathogen that causes the infectious disease pneumonia.

Remember that some bacteria are autotrophic and can carry out photosynthesis but most feed by absorbing material through their cell walls.

Animals

Animals by definition are multicellular organisms.  Animal cells do not have a cell wall and do not contain chloroplasts and so cannot photosynthesise.  Animals are often able to move from place to place and have a nervous system.  Animal cells can store carbohydrate in liver and muscle cells in the form of a storage polysaccharide called glycogen.

The examples of animals mentioned in the specification are humans, housefly and mosquito.

Plants

The plant kingdom also contains organisms that are multicellular.  In contrast to animals, plant cells do photosynthesise and do contain chloroplasts.  Plant cells have a cell wall made of the polysaccharide cellulose.  Carbohydrates are stored in plant cells in the form of starch and are transported in the phloem as a sugar called sucrose.

The examples of plants mentioned in the specification are maize, peas and clover.  Maize is a wind-pollinated flowering plant and peas and clover are interesting because they are leguminous plants.  If you remember your work on nitrogen-cycle from E summer, you will know that leguminous plants contain root nodules that contain nitrogen-fixing bacteria.

Fungi

Fungi are a group of organisms that include moulds, mushrooms, toadstools and yeasts.  They are made of cells with a cell wall made of chitin and a nucleus.  Fungi do not photosynthesise and do not contain chloroplasts.  They feed by secreting digestive enzymes onto the food material they are living on and then absorbing the products of digestion:  a process called saprotrophic nutrition.  Fungi store carbohydrate in the form of glycogen.

Multicellular fungi such as Mucor are often organised into a mycelium, a mesh of thread-like structures called hyphae.  Each hypha is a structure containing many nuclei.  Some fungi such as the yeasts used in the brewing and baking industries are single-celled.

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Protoctists

This is the least interesting of the 5 Kingdoms (which is saying something…..)  Protoctists are all single celled organisms but unlike bacteria they are made of eukaryotic cells: cells with a nucleus and organelles like mitochondria and chloroplasts.  Some protoctists like Amoeba share many features with animal cells while others like Chlorella are more plant-like and contain chloroplasts to photosynthesise.  Some protoctists are pathogenic for example Plasmodium, the single celled organism that causes the disease Malaria.

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An Amoeba cell on the left and some Chlorella cells on the right.